Chicken ‘memories’ ease return to ancestral homeland

Organisms carry long-term “memories” of their ancestral homelands that improve their adaptation to environmental change, according to a new study.

The study, for which researchers raised chickens on the Tibetan Plateau and an adjacent lowland site, provides new insights into how creatures adapt to changing environments.

It’s a topic that’s especially relevant today in the context of rapid climate change, which is creating challenges for plants and animals worldwide.

“These findings reveal a mechanism by which past experience affects future evolution…”

People domesticated the chicken from the red jungle fowl in South Asia and Southeast Asia at least 4,000 to 4,500 years ago. They brought the chicken to the Tibetan Plateau by about 1,200 years ago, where it acquired high-altitude adaptations such as an increase in oxygen-carrying red blood cells.

Tibetan chickens and adaptation

In a set of experiments, researchers hatched and reared hundreds of chickens on the Tibetan Plateau, at an elevation of nearly 11,000 feet, and at an adjacent lowland site in China’s Sichuan Province. Some of the eggs from lowland chickens hatched on the plateau, and some high-altitude eggs hatched at a site 2,200 feet above sea level.

A male Tibetan chicken (left) and a female Tibetan chicken. Bottom row: A male lowland chicken (left) and a female lowland chicken. (Credit: Diyan Li)

The researchers’ goal was to assess the relative contributions of two types of phenotypic change—meaning changes to an organism’s observable physical characteristics or traits—to the process of environmental adaptation.

“Plastic” phenotypic changes involve altered gene activity but no rewriting of the genetic code in DNA molecules, while mutations cause altered gene activity by modifying the sequence of letters in the code itself.

Evolutionary biologists have debated the relative roles of plastic and mutation-induced changes in adaptation, and whether the former serve as stepping stones to the latter.

In the chicken study, researchers were specifically interested in how organisms readapt when reintroduced to ancestral environments. They found that plastic changes play a more prominent role when organisms return to an ancestral home than when they adapt to new environments.

“These findings reveal a mechanism by which past experience affects future evolution,” says Jianzhi Zhang, the study’s senior author and a professor in the ecology and evolutionary biology department.

“Our findings contribute to the recent debate on the relative roles of plastic and genetic changes in adaptation and reveal the importance of considering whether the environment is changing to a novel or ancestral one.”

To study the relative roles of plastic and DNA-sequence changes, the researchers looked at gene-expression differences between lowland and Tibetan chickens in five tissue types: brain, liver, lung, heart, and muscle. To do that, they analyzed RNA transcriptomes from cells in those tissues.

The genome is made of DNA that contains the instructions needed to build an organism. For those instructions to be carried out, DNA must be read and transcribed into messenger RNA molecules.

By analyzing the entire collection of RNA sequences in a cell, known as the transcriptome, researchers can determine when and where genes are turned on and off. Gene-expression studies provide snapshots of actively expressed genes under various conditions.

Changes in gene activity alter an organism’s phenotype, which includes its morphology, behavior, and physiology. The term phenotypic plasticity refers to environmentally induced phenotypic changes that do not involve genetic mutations.

In the chicken study, the researchers found that while many mutation-induced phenotypic changes were necessary when the animals first adapted to the Tibetan Plateau, plastic changes largely transformed the transcriptomes to the preferred state when Tibetan chickens returned to the lowland.

Eggs, too

The researchers saw a similar result with egg “hatchability,” the fraction of fertilized chicken eggs that hatched in the study.

When they incubated lowland eggs on the unfamiliar Tibetan Plateau, hatchability was significantly lower than that of Tibetan chicken eggs. But when they incubated Tibetan eggs in the lowland—an environment familiar from the distant past—there was no significant difference in hatchability between the two groups.

The egg result suggests that adaptive mutational changes are necessary when an organism moves to an unfamiliar environment for the first time, while plastic changes will do the trick when those same creatures return to an ancestral home.

Zhang’s team also analyzed transcriptomes from previous studies of guppies and E. coli bacteria and found comparable results—regardless of whether the new environment was more stressful or less stressful than the ancestral environment.

“In summary, our work uncovers a phenomenon conserved from bacteria to vertebrates that organisms remember their ancestral environments in the form of phenotypic plasticity,” the authors write.

The findings appear in the journal Science Advances. Additional coauthors are from the University of Michigan and Sichuan Agricultural University.

Support for the work came from the US National Institutes of Health and the Sichuan Provincial Department of Science and Technology Program. The Institutional Animal Care and Use Committee of Sichuan Agricultural University approved the animal handling experiment.

Source: University of Michigan

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